mcpindex.aiv0
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io.github.mims-harvard/tooluniverse

io.github.mims-harvard/tooluniverse·v1.1.11·Other
Quality Score
90
/100

1000+ scientific tools for AI scientists: life science, reserach, literature, and more.

Repository →Website →
§01  Install
Claude Desktop (uvx)
{
  "mcpServers": {
    "tooluniverse": {
      "command": "uvx",
      "args": [
        "tooluniverse"
      ],
      "env": {
        "OPENAI_API_KEY": "<your-openai_api_key>",
        "ANTHROPIC_API_KEY": "<your-anthropic_api_key>",
        "GEMINI_API_KEY": "<your-gemini_api_key>",
        "OPENROUTER_API_KEY": "<your-openrouter_api_key>",
        "AZURE_OPENAI_API_KEY": "<your-azure_openai_api_key>",
        "HF_TOKEN": "<your-hf_token>",
        "NCBI_API_KEY": "<your-ncbi_api_key>",
        "SEMANTIC_SCHOLAR_API_KEY": "<your-semantic_scholar_api_key>",
        "BIOGRID_API_KEY": "<your-biogrid_api_key>",
        "DISGENET_API_KEY": "<your-disgenet_api_key>",
        "OMIM_API_KEY": "<your-omim_api_key>",
        "ONCOKB_API_TOKEN": "<your-oncokb_api_token>",
        "NVIDIA_API_KEY": "<your-nvidia_api_key>",
        "USPTO_API_KEY": "<your-uspto_api_key>",
        "UMLS_API_KEY": "<your-umls_api_key>",
        "BRENDA_EMAIL": "<brenda_email>",
        "BRENDA_PASSWORD": "<your-brenda_password>"
      }
    }
  }
}
§02  Environment variables
OPENAI_API_KEY
secret

OpenAI API key for LLM-based tool finding and embedding features

ANTHROPIC_API_KEY
secret

Anthropic API key for Claude-based features

GEMINI_API_KEY
secret

Google Gemini API key for Gemini-based features

OPENROUTER_API_KEY
secret

OpenRouter API key for accessing 100+ LLM models

AZURE_OPENAI_API_KEY
secret

Azure OpenAI API key (alternative to OpenAI)

HF_TOKEN
secret

HuggingFace token for accessing models and datasets

NCBI_API_KEY
secret

NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/

SEMANTIC_SCHOLAR_API_KEY
secret

Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api

BIOGRID_API_KEY
secret

BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/

DISGENET_API_KEY
secret

DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/

OMIM_API_KEY
secret

OMIM API key for Mendelian disease data. Register at https://omim.org/api

ONCOKB_API_TOKEN
secret

OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess

NVIDIA_API_KEY
secret

NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com

USPTO_API_KEY
secret

USPTO API key for patent data access. Register at https://developer.uspto.gov/

UMLS_API_KEY
secret

UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/

BRENDA_EMAIL

BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/

BRENDA_PASSWORD
secret

BRENDA enzyme database login password

§03  MCP Quality Score  ·  methodology
freshness
25
completeness
15
installability
25
documentation
15
stability
10
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