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io.github.galaxyproject/galaxy-mcp

io.github.galaxyproject/galaxy-mcp·v1.3.0·Other
Quality Score
80
/100

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

Repository →
§01  Install
Claude Desktop (uvx)
{
  "mcpServers": {
    "galaxy-mcp": {
      "command": "uvx",
      "args": [
        "galaxy-mcp"
      ],
      "env": {
        "GALAXY_URL": "<galaxy_url>",
        "GALAXY_API_KEY": "<your-galaxy_api_key>"
      }
    }
  }
}
§02  Environment variables
GALAXY_URL
required

URL of the Galaxy instance to connect to (e.g., https://usegalaxy.org)

GALAXY_API_KEY
requiredsecret

API key for authenticating with the Galaxy instance

§03  MCP Quality Score  ·  methodology
freshness
20
completeness
10
installability
25
documentation
15
stability
10
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