io.github.cyanheads/protein-mcp-server
Quality Score
72
/100
MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.
§01 Install
Claude Desktop (claude_desktop_config.json)
{
"mcpServers": {
"protein-mcp-server": {
"command": "npx",
"args": [
"-y",
"protein-mcp-server"
],
"env": {
"MCP_LOG_LEVEL": "info",
"MCP_HTTP_HOST": "127.0.0.1",
"MCP_HTTP_PORT": "3010",
"MCP_HTTP_ENDPOINT_PATH": "/mcp",
"MCP_AUTH_MODE": "none"
}
}
}
}Cursor (.cursor/mcp.json)
{
"mcpServers": {
"protein-mcp-server": {
"command": "npx",
"args": [
"-y",
"protein-mcp-server"
],
"env": {
"MCP_LOG_LEVEL": "info",
"MCP_HTTP_HOST": "127.0.0.1",
"MCP_HTTP_PORT": "3010",
"MCP_HTTP_ENDPOINT_PATH": "/mcp",
"MCP_AUTH_MODE": "none"
}
}
}
}Cline (cline_mcp_settings.json)
npx -y protein-mcp-server§02 Environment variables
MCP_LOG_LEVELSets the minimum log level for output (e.g., 'debug', 'info', 'warn').
MCP_HTTP_HOSTThe hostname for the HTTP server.
MCP_HTTP_PORTThe port to run the HTTP server on.
MCP_HTTP_ENDPOINT_PATHThe endpoint path for the MCP server.
MCP_AUTH_MODEAuthentication mode to use: 'none', 'jwt', or 'oauth'.
MCP_LOG_LEVELSets the minimum log level for output (e.g., 'debug', 'info', 'warn').
§03 MCP Quality Score · methodology
freshness
12
completeness
10
installability
25
documentation
15
stability
10
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